Index

A

adam_init() (in module ngclearn.utils.optim.adam) adam_step() (in module ngclearn.utils.optim.adam) AdExCell (class in ngclearn.components.neurons.spiking.adExCell) advance_state() (ngclearn.components.input_encoders.bernoulliCell.BernoulliCell method) (ngclearn.components.input_encoders.latencyCell.LatencyCell method) (ngclearn.components.input_encoders.phasorCell.PhasorCell method) (ngclearn.components.input_encoders.poissonCell.PoissonCell method) (ngclearn.components.neurons.graded.bernoulliErrorCell.BernoulliErrorCell method) (ngclearn.components.neurons.graded.gaussianErrorCell.GaussianErrorCell method) (ngclearn.components.neurons.graded.laplacianErrorCell.LaplacianErrorCell method) (ngclearn.components.neurons.graded.leakyNoiseCell.LeakyNoiseCell method) (ngclearn.components.neurons.graded.rateCell.RateCell method) (ngclearn.components.neurons.graded.rewardErrorCell.RewardErrorCell method) (ngclearn.components.neurons.spiking.adExCell.AdExCell method) (ngclearn.components.neurons.spiking.fitzhughNagumoCell.FitzhughNagumoCell method) (ngclearn.components.neurons.spiking.hodgkinHuxleyCell.HodgkinHuxleyCell method) (ngclearn.components.neurons.spiking.IFCell.IFCell method) (ngclearn.components.neurons.spiking.izhikevichCell.IzhikevichCell method) (ngclearn.components.neurons.spiking.LIFCell.LIFCell method) (ngclearn.components.neurons.spiking.quadLIFCell.QuadLIFCell method) (ngclearn.components.neurons.spiking.RAFCell.RAFCell method) (ngclearn.components.neurons.spiking.sLIFCell.SLIFCell method) (ngclearn.components.neurons.spiking.WTASCell.WTASCell method) (ngclearn.components.other.expKernel.ExpKernel method) (ngclearn.components.other.varTrace.VarTrace method) (ngclearn.components.synapses.alphaSynapse.AlphaSynapse method) (ngclearn.components.synapses.convolution.convSynapse.ConvSynapse method) (ngclearn.components.synapses.convolution.deconvSynapse.DeconvSynapse method) (ngclearn.components.synapses.denseSynapse.DenseSynapse method) (ngclearn.components.synapses.doubleExpSynapse.DoubleExpSynapse method) (ngclearn.components.synapses.exponentialSynapse.ExponentialSynapse method) (ngclearn.components.synapses.patched.patchedSynapse.PatchedSynapse method) (ngclearn.components.synapses.STPDenseSynapse.STPDenseSynapse method)

AlphaSynapse (class in ngclearn.components.synapses.alphaSynapse) amax (ngclearn.utils.distribution_generator.DistributionParams attribute) amin (ngclearn.utils.distribution_generator.DistributionParams attribute) analyze_scores() (in module ngclearn.utils.metric_utils) arctan_estimator() (in module ngclearn.utils.surrogate_fx) AttentiveProbe (class in ngclearn.utils.analysis.attentive_probe)

B

backtransmit() (ngclearn.components.synapses.convolution.hebbianConvSynapse.HebbianConvSynapse method) (ngclearn.components.synapses.convolution.hebbianDeconvSynapse.HebbianDeconvSynapse method) (ngclearn.components.synapses.convolution.traceSTDPConvSynapse.TraceSTDPConvSynapse method) (ngclearn.components.synapses.convolution.traceSTDPDeconvSynapse.TraceSTDPDeconvSynapse method) batch_set() (ngclearn.modules.regression.elastic_net.Iterative_ElasticNet method) (ngclearn.modules.regression.lasso.Iterative_Lasso method) (ngclearn.modules.regression.ridge.Iterative_Ridge method)

BCMSynapse (class in ngclearn.components.synapses.hebbian.BCMSynapse) BernoulliCell (class in ngclearn.components.input_encoders.bernoulliCell) BernoulliErrorCell (class in ngclearn.components.neurons.graded.bernoulliErrorCell) BernoulliMixture (class in ngclearn.utils.density.bernoulliMixture) binarize() (in module ngclearn.utils.model_utils) bkwta() (in module ngclearn.utils.model_utils)

C

calc_dK_conv() (in module ngclearn.components.synapses.convolution.ngcconv) calc_dK_deconv() (in module ngclearn.components.synapses.convolution.ngcconv) calc_dX_conv() (in module ngclearn.components.synapses.convolution.ngcconv) calc_dX_deconv() (in module ngclearn.components.synapses.convolution.ngcconv) calc_log_likelihood() (ngclearn.utils.density.bernoulliMixture.BernoulliMixture method) (ngclearn.utils.density.exponentialMixture.ExponentialMixture method) (ngclearn.utils.density.gaussianMixture.GaussianMixture method) (ngclearn.utils.density.mixture.Mixture method) calc_spike_times() (ngclearn.components.input_encoders.latencyCell.LatencyCell method) calc_update() (ngclearn.components.synapses.hebbian.hebbianSynapse.HebbianSynapse method) clamp() (ngclearn.modules.regression.elastic_net.Iterative_ElasticNet method) (ngclearn.modules.regression.lasso.Iterative_Lasso method) (ngclearn.modules.regression.ridge.Iterative_Ridge method) clamp_max() (in module ngclearn.utils.model_utils) clamp_min() (in module ngclearn.utils.model_utils)

clear() (ngclearn.utils.JaxProcessesMixin.JaxProcessesMixin method) clip() (in module ngclearn.utils.model_utils) col_mask (ngclearn.utils.distribution_generator.DistributionParams attribute) constant() (ngclearn.utils.distribution_generator.DistributionGenerator static method) conv2d() (in module ngclearn.components.synapses.convolution.ngcconv) ConvSynapse (class in ngclearn.components.synapses.convolution.convSynapse) create_function() (in module ngclearn.utils.model_utils) create_overlay_raster_plot() (in module ngclearn.utils.viz.raster) Create_Patches (class in ngclearn.utils.patch_utils) create_patches() (ngclearn.utils.patch_utils.Create_Patches method) create_plot() (in module ngclearn.utils.viz.compartment_plot) create_raster_plot() (in module ngclearn.utils.viz.compartment_raster) (in module ngclearn.utils.viz.raster) cross_attention() (in module ngclearn.utils.analysis.attentive_probe) cubic_2D() (in module ngclearn.utils.diffeq.odes)

D

d_clip() (in module ngclearn.utils.model_utils) d_elu() (in module ngclearn.utils.model_utils) d_gelu() (in module ngclearn.utils.model_utils) d_heaviside() (in module ngclearn.utils.model_utils) d_identity() (in module ngclearn.utils.model_utils) d_lrelu() (in module ngclearn.utils.model_utils) d_relu() (in module ngclearn.utils.model_utils) d_relu6() (in module ngclearn.utils.model_utils) d_sigmoid() (in module ngclearn.utils.model_utils) d_silu() (in module ngclearn.utils.model_utils) d_sine() (in module ngclearn.utils.model_utils) d_softplus() (in module ngclearn.utils.model_utils) d_swish() (in module ngclearn.utils.model_utils) d_tanh() (in module ngclearn.utils.model_utils)

d_telu() (in module ngclearn.utils.model_utils) d_threshold() (in module ngclearn.utils.model_utils) DataLoader (class in ngclearn.utils.data_loader) deconv2d() (in module ngclearn.components.synapses.convolution.ngcconv) DeconvSynapse (class in ngclearn.components.synapses.convolution.deconvSynapse) DenseSynapse (class in ngclearn.components.synapses.denseSynapse) deserialize() (in module ngclearn.utils.io_utils) DistributionGenerator (class in ngclearn.utils.distribution_generator) DistributionInitializer (class in ngclearn.utils.distribution_generator) DistributionParams (class in ngclearn.utils.distribution_generator) DoubleExpSynapse (class in ngclearn.components.synapses.doubleExpSynapse) drop_out() (in module ngclearn.utils.model_utils) dtype (ngclearn.utils.distribution_generator.DistributionParams attribute) dv_dt() (in module ngclearn.components.neurons.spiking.hodgkinHuxleyCell) dx_dt() (in module ngclearn.components.neurons.spiking.hodgkinHuxleyCell)

E

elu() (in module ngclearn.utils.model_utils) eval_attention_probe() (in module ngclearn.utils.analysis.attentive_probe) eval_linear_probe() (in module ngclearn.utils.analysis.linear_probe) eval_log_density() (ngclearn.components.neurons.graded.gaussianErrorCell.GaussianErrorCell static method) EventSTDPSynapse (class in ngclearn.components.synapses.hebbian.eventSTDPSynapse) evolve() (ngclearn.components.neurons.graded.rewardErrorCell.RewardErrorCell method) (ngclearn.components.synapses.convolution.hebbianConvSynapse.HebbianConvSynapse method) (ngclearn.components.synapses.convolution.hebbianDeconvSynapse.HebbianDeconvSynapse method) (ngclearn.components.synapses.convolution.traceSTDPConvSynapse.TraceSTDPConvSynapse method) (ngclearn.components.synapses.convolution.traceSTDPDeconvSynapse.TraceSTDPDeconvSynapse method) (ngclearn.components.synapses.hebbian.BCMSynapse.BCMSynapse method) (ngclearn.components.synapses.hebbian.eventSTDPSynapse.EventSTDPSynapse method) (ngclearn.components.synapses.hebbian.expSTDPSynapse.ExpSTDPSynapse method) (ngclearn.components.synapses.hebbian.hebbianSynapse.HebbianSynapse method) (ngclearn.components.synapses.hebbian.traceSTDPSynapse.TraceSTDPSynapse method) (ngclearn.components.synapses.modulated.MSTDPETSynapse.MSTDPETSynapse method) (ngclearn.components.synapses.modulated.REINFORCESynapse.REINFORCESynapse method) (ngclearn.components.synapses.patched.hebbianPatchedSynapse.HebbianPatchedSynapse method)

ExpKernel (class in ngclearn.components.other.expKernel) ExponentialMixture (class in ngclearn.utils.density.exponentialMixture) ExponentialSynapse (class in ngclearn.components.synapses.exponentialSynapse) ExpSTDPSynapse (class in ngclearn.components.synapses.hebbian.expSTDPSynapse) extract_pca_latents() (in module ngclearn.utils.viz.dim_reduce) extract_tsne_latents() (in module ngclearn.utils.viz.dim_reduce) eye (ngclearn.utils.distribution_generator.DistributionParams attribute)

F

fan_in_gaussian() (ngclearn.utils.distribution_generator.DistributionGenerator static method) fan_in_uniform() (ngclearn.utils.distribution_generator.DistributionGenerator static method) fit() (ngclearn.modules.regression.elastic_net.Iterative_ElasticNet method) (ngclearn.modules.regression.lasso.Iterative_Lasso method) (ngclearn.modules.regression.ridge.Iterative_Ridge method) (ngclearn.utils.analysis.probe.Probe method) (ngclearn.utils.density.bernoulliMixture.BernoulliMixture method) (ngclearn.utils.density.exponentialMixture.ExponentialMixture method) (ngclearn.utils.density.gaussianMixture.GaussianMixture method) (ngclearn.utils.density.mixture.Mixture method) (ngclearn.utils.feature_dictionaries.polynomialLibrary.PolynomialLibrary method)

FitzhughNagumoCell (class in ngclearn.components.neurons.spiking.fitzhughNagumoCell)

G

gaussian() (ngclearn.utils.distribution_generator.DistributionGenerator static method) GaussianErrorCell (class in ngclearn.components.neurons.graded.gaussianErrorCell) GaussianMixture (class in ngclearn.utils.density.gaussianMixture) gelu() (in module ngclearn.utils.model_utils) generate_pacthify_patch_set() (in module ngclearn.utils.patch_utils)

generate_patch_set() (in module ngclearn.utils.patch_utils) get_integrator_code() (in module ngclearn.utils.diffeq.ode_utils) get_opt_init_fn() (in module ngclearn.utils.optim.optim_utils) get_opt_step_fn() (in module ngclearn.utils.optim.optim_utils) get_same_conv_padding() (in module ngclearn.components.synapses.convolution.ngcconv) get_valid_conv_padding() (in module ngclearn.components.synapses.convolution.ngcconv)

H

heaviside() (in module ngclearn.utils.model_utils) HebbianConvSynapse (class in ngclearn.components.synapses.convolution.hebbianConvSynapse) HebbianDeconvSynapse (class in ngclearn.components.synapses.convolution.hebbianDeconvSynapse) HebbianPatchedSynapse (class in ngclearn.components.synapses.patched.hebbianPatchedSynapse) HebbianSynapse (class in ngclearn.components.synapses.hebbian.hebbianSynapse) help() (ngclearn.components.input_encoders.bernoulliCell.BernoulliCell class method) (ngclearn.components.input_encoders.latencyCell.LatencyCell class method) (ngclearn.components.input_encoders.phasorCell.PhasorCell class method) (ngclearn.components.input_encoders.poissonCell.PoissonCell class method) (ngclearn.components.neurons.graded.bernoulliErrorCell.BernoulliErrorCell class method) (ngclearn.components.neurons.graded.gaussianErrorCell.GaussianErrorCell class method) (ngclearn.components.neurons.graded.laplacianErrorCell.LaplacianErrorCell class method) (ngclearn.components.neurons.graded.leakyNoiseCell.LeakyNoiseCell class method) (ngclearn.components.neurons.graded.rateCell.RateCell class method) (ngclearn.components.neurons.graded.rewardErrorCell.RewardErrorCell class method) (ngclearn.components.neurons.spiking.adExCell.AdExCell class method) (ngclearn.components.neurons.spiking.fitzhughNagumoCell.FitzhughNagumoCell class method) (ngclearn.components.neurons.spiking.hodgkinHuxleyCell.HodgkinHuxleyCell class method) (ngclearn.components.neurons.spiking.IFCell.IFCell class method) (ngclearn.components.neurons.spiking.izhikevichCell.IzhikevichCell class method) (ngclearn.components.neurons.spiking.LIFCell.LIFCell class method) (ngclearn.components.neurons.spiking.quadLIFCell.QuadLIFCell class method) (ngclearn.components.neurons.spiking.RAFCell.RAFCell class method) (ngclearn.components.neurons.spiking.sLIFCell.SLIFCell class method) (ngclearn.components.neurons.spiking.WTASCell.WTASCell class method) (ngclearn.components.other.expKernel.ExpKernel class method) (ngclearn.components.other.varTrace.VarTrace class method) (ngclearn.components.synapses.alphaSynapse.AlphaSynapse class method) (ngclearn.components.synapses.convolution.convSynapse.ConvSynapse class method) (ngclearn.components.synapses.convolution.deconvSynapse.DeconvSynapse class method) (ngclearn.components.synapses.convolution.hebbianConvSynapse.HebbianConvSynapse class method) (ngclearn.components.synapses.convolution.hebbianDeconvSynapse.HebbianDeconvSynapse class method) (ngclearn.components.synapses.convolution.traceSTDPConvSynapse.TraceSTDPConvSynapse class method) (ngclearn.components.synapses.convolution.traceSTDPDeconvSynapse.TraceSTDPDeconvSynapse class method) (ngclearn.components.synapses.denseSynapse.DenseSynapse class method) (ngclearn.components.synapses.doubleExpSynapse.DoubleExpSynapse class method) (ngclearn.components.synapses.exponentialSynapse.ExponentialSynapse class method) (ngclearn.components.synapses.hebbian.BCMSynapse.BCMSynapse class method) (ngclearn.components.synapses.hebbian.eventSTDPSynapse.EventSTDPSynapse class method) (ngclearn.components.synapses.hebbian.expSTDPSynapse.ExpSTDPSynapse class method) (ngclearn.components.synapses.hebbian.hebbianSynapse.HebbianSynapse class method) (ngclearn.components.synapses.hebbian.traceSTDPSynapse.TraceSTDPSynapse class method) (ngclearn.components.synapses.modulated.MSTDPETSynapse.MSTDPETSynapse class method) (ngclearn.components.synapses.modulated.REINFORCESynapse.REINFORCESynapse class method) (ngclearn.components.synapses.patched.hebbianPatchedSynapse.HebbianPatchedSynapse class method) (ngclearn.components.synapses.patched.patchedSynapse.PatchedSynapse class method) (ngclearn.components.synapses.STPDenseSynapse.STPDenseSynapse class method)

HodgkinHuxleyCell (class in ngclearn.components.neurons.spiking.hodgkinHuxleyCell) hollow (ngclearn.utils.distribution_generator.DistributionParams attribute)

I

identity() (in module ngclearn.utils.model_utils) IFCell (class in ngclearn.components.neurons.spiking.IFCell) include_bias (ngclearn.utils.feature_dictionaries.polynomialLibrary.PolynomialLibrary attribute) init() (ngclearn.utils.density.bernoulliMixture.BernoulliMixture method) (ngclearn.utils.density.exponentialMixture.ExponentialMixture method) (ngclearn.utils.density.gaussianMixture.GaussianMixture method) (ngclearn.utils.density.mixture.Mixture method)

inverse_logistic() (in module ngclearn.utils.model_utils) inverse_sigmoid() (in module ngclearn.utils.model_utils) inverse_tanh() (in module ngclearn.utils.model_utils) Iterative_ElasticNet (class in ngclearn.modules.regression.elastic_net) Iterative_Lasso (class in ngclearn.modules.regression.lasso) Iterative_Ridge (class in ngclearn.modules.regression.ridge) IzhikevichCell (class in ngclearn.components.neurons.spiking.izhikevichCell)

J

JaxComponent (class in ngclearn.components.jaxComponent) JaxJointProcess (class in ngclearn.utils.JaxProcessesMixin)

JaxMethodProcess (class in ngclearn.utils.JaxProcessesMixin) JaxProcessesMixin (class in ngclearn.utils.JaxProcessesMixin)

L

LaplacianErrorCell (class in ngclearn.components.neurons.graded.laplacianErrorCell) LatencyCell (class in ngclearn.components.input_encoders.latencyCell) layer_normalize() (in module ngclearn.utils.model_utils) LeakyNoiseCell (class in ngclearn.components.neurons.graded.leakyNoiseCell) leapfrog() (in module ngclearn.utils.diffeq.ode_utils) LIFCell (class in ngclearn.components.neurons.spiking.LIFCell) linear_2D() (in module ngclearn.utils.diffeq.odes) linear_3D() (in module ngclearn.utils.diffeq.odes)

LinearProbe (class in ngclearn.utils.analysis.linear_probe) load() (ngclearn.components.jaxComponent.JaxComponent method) (ngclearn.components.neurons.spiking.IFCell.IFCell method) (ngclearn.components.neurons.spiking.sLIFCell.SLIFCell method) (ngclearn.components.synapses.hebbian.hebbianSynapse.HebbianSynapse method) load_pkl() (in module ngclearn.utils.io_utils) lorenz() (in module ngclearn.utils.diffeq.odes) lower_triangle (ngclearn.utils.distribution_generator.DistributionParams attribute) lrelu() (in module ngclearn.utils.model_utils)

M

make_video() (in module ngclearn.utils.viz.synapse_plot) makedir() (in module ngclearn.utils.io_utils) makedirs() (in module ngclearn.utils.io_utils) MaskCollator (class in ngclearn.utils.masks.multiblock2d) masked_fill() (in module ngclearn.utils.analysis.attentive_probe) measure_ACC() (in module ngclearn.utils.metric_utils) measure_BCE() (in module ngclearn.utils.metric_utils) measure_BIC() (in module ngclearn.utils.metric_utils) measure_breadth_TC() (in module ngclearn.utils.metric_utils) measure_CatNLL() (in module ngclearn.utils.metric_utils) measure_fanoFactor() (in module ngclearn.utils.metric_utils) measure_firingRate() (in module ngclearn.utils.metric_utils) measure_gaussian_KLD() (in module ngclearn.utils.metric_utils) measure_KLD() (in module ngclearn.utils.metric_utils) measure_MAE() (in module ngclearn.utils.metric_utils) measure_MSE() (in module ngclearn.utils.metric_utils) measure_RMSE() (in module ngclearn.utils.metric_utils) measure_sparsity() (in module ngclearn.utils.metric_utils) Mixture (class in ngclearn.utils.density.mixture) module ngclearn ngclearn.components ngclearn.components.input_encoders ngclearn.components.input_encoders.bernoulliCell ngclearn.components.input_encoders.latencyCell ngclearn.components.input_encoders.phasorCell ngclearn.components.input_encoders.poissonCell ngclearn.components.jaxComponent ngclearn.components.neurons ngclearn.components.neurons.graded ngclearn.components.neurons.graded.bernoulliErrorCell ngclearn.components.neurons.graded.gaussianErrorCell ngclearn.components.neurons.graded.laplacianErrorCell ngclearn.components.neurons.graded.leakyNoiseCell ngclearn.components.neurons.graded.rateCell ngclearn.components.neurons.graded.rewardErrorCell ngclearn.components.neurons.spiking ngclearn.components.neurons.spiking.adExCell ngclearn.components.neurons.spiking.fitzhughNagumoCell ngclearn.components.neurons.spiking.hodgkinHuxleyCell ngclearn.components.neurons.spiking.IFCell ngclearn.components.neurons.spiking.izhikevichCell ngclearn.components.neurons.spiking.LIFCell ngclearn.components.neurons.spiking.quadLIFCell ngclearn.components.neurons.spiking.RAFCell ngclearn.components.neurons.spiking.sLIFCell ngclearn.components.neurons.spiking.WTASCell ngclearn.components.other ngclearn.components.other.expKernel ngclearn.components.other.varTrace ngclearn.components.synapses ngclearn.components.synapses.alphaSynapse ngclearn.components.synapses.convolution ngclearn.components.synapses.convolution.convSynapse ngclearn.components.synapses.convolution.deconvSynapse ngclearn.components.synapses.convolution.hebbianConvSynapse ngclearn.components.synapses.convolution.hebbianDeconvSynapse ngclearn.components.synapses.convolution.ngcconv ngclearn.components.synapses.convolution.staticConvSynapse ngclearn.components.synapses.convolution.staticDeconvSynapse ngclearn.components.synapses.convolution.traceSTDPConvSynapse ngclearn.components.synapses.convolution.traceSTDPDeconvSynapse ngclearn.components.synapses.denseSynapse ngclearn.components.synapses.doubleExpSynapse ngclearn.components.synapses.exponentialSynapse ngclearn.components.synapses.hebbian ngclearn.components.synapses.hebbian.BCMSynapse ngclearn.components.synapses.hebbian.eventSTDPSynapse ngclearn.components.synapses.hebbian.expSTDPSynapse ngclearn.components.synapses.hebbian.hebbianSynapse ngclearn.components.synapses.hebbian.traceSTDPSynapse ngclearn.components.synapses.modulated ngclearn.components.synapses.modulated.MSTDPETSynapse ngclearn.components.synapses.modulated.REINFORCESynapse ngclearn.components.synapses.patched ngclearn.components.synapses.patched.hebbianPatchedSynapse ngclearn.components.synapses.patched.patchedSynapse ngclearn.components.synapses.patched.staticPatchedSynapse ngclearn.components.synapses.staticSynapse ngclearn.components.synapses.STPDenseSynapse ngclearn.modules ngclearn.modules.regression ngclearn.modules.regression.elastic_net ngclearn.modules.regression.lasso ngclearn.modules.regression.ridge ngclearn.operations ngclearn.utils ngclearn.utils.analysis ngclearn.utils.analysis.attentive_probe ngclearn.utils.analysis.linear_probe ngclearn.utils.analysis.probe ngclearn.utils.data_loader ngclearn.utils.density ngclearn.utils.density.bernoulliMixture ngclearn.utils.density.exponentialMixture ngclearn.utils.density.gaussianMixture ngclearn.utils.density.mixture ngclearn.utils.diffeq ngclearn.utils.diffeq.ode_utils ngclearn.utils.diffeq.odes ngclearn.utils.distribution_generator ngclearn.utils.feature_dictionaries ngclearn.utils.feature_dictionaries.polynomialLibrary ngclearn.utils.io_utils ngclearn.utils.JaxProcessesMixin ngclearn.utils.masks ngclearn.utils.masks.multiblock2d ngclearn.utils.metric_utils ngclearn.utils.model_utils ngclearn.utils.optim ngclearn.utils.optim.adam ngclearn.utils.optim.nag ngclearn.utils.optim.optim_utils ngclearn.utils.optim.sgd ngclearn.utils.patch ngclearn.utils.patch_utils ngclearn.utils.surrogate_fx ngclearn.utils.viz ngclearn.utils.viz.compartment_plot ngclearn.utils.viz.compartment_raster ngclearn.utils.viz.dim_reduce ngclearn.utils.viz.raster ngclearn.utils.viz.spike_plot ngclearn.utils.viz.synapse_plot

MSTDPETSynapse (class in ngclearn.components.synapses.modulated.MSTDPETSynapse)

N

nag_init() (in module ngclearn.utils.optim.nag) nag_step() (in module ngclearn.utils.optim.nag) ngclearn module ngclearn.components module ngclearn.components.input_encoders module ngclearn.components.input_encoders.bernoulliCell module ngclearn.components.input_encoders.latencyCell module ngclearn.components.input_encoders.phasorCell module ngclearn.components.input_encoders.poissonCell module ngclearn.components.jaxComponent module ngclearn.components.neurons module ngclearn.components.neurons.graded module ngclearn.components.neurons.graded.bernoulliErrorCell module ngclearn.components.neurons.graded.gaussianErrorCell module ngclearn.components.neurons.graded.laplacianErrorCell module ngclearn.components.neurons.graded.leakyNoiseCell module ngclearn.components.neurons.graded.rateCell module ngclearn.components.neurons.graded.rewardErrorCell module ngclearn.components.neurons.spiking module ngclearn.components.neurons.spiking.adExCell module ngclearn.components.neurons.spiking.fitzhughNagumoCell module ngclearn.components.neurons.spiking.hodgkinHuxleyCell module ngclearn.components.neurons.spiking.IFCell module ngclearn.components.neurons.spiking.izhikevichCell module ngclearn.components.neurons.spiking.LIFCell module ngclearn.components.neurons.spiking.quadLIFCell module ngclearn.components.neurons.spiking.RAFCell module ngclearn.components.neurons.spiking.sLIFCell module ngclearn.components.neurons.spiking.WTASCell module ngclearn.components.other module ngclearn.components.other.expKernel module ngclearn.components.other.varTrace module ngclearn.components.synapses module ngclearn.components.synapses.alphaSynapse module ngclearn.components.synapses.convolution module ngclearn.components.synapses.convolution.convSynapse module ngclearn.components.synapses.convolution.deconvSynapse module ngclearn.components.synapses.convolution.hebbianConvSynapse module ngclearn.components.synapses.convolution.hebbianDeconvSynapse module ngclearn.components.synapses.convolution.ngcconv module ngclearn.components.synapses.convolution.staticConvSynapse module ngclearn.components.synapses.convolution.staticDeconvSynapse module ngclearn.components.synapses.convolution.traceSTDPConvSynapse module ngclearn.components.synapses.convolution.traceSTDPDeconvSynapse module ngclearn.components.synapses.denseSynapse module ngclearn.components.synapses.doubleExpSynapse module ngclearn.components.synapses.exponentialSynapse module ngclearn.components.synapses.hebbian module ngclearn.components.synapses.hebbian.BCMSynapse module ngclearn.components.synapses.hebbian.eventSTDPSynapse module ngclearn.components.synapses.hebbian.expSTDPSynapse module ngclearn.components.synapses.hebbian.hebbianSynapse module ngclearn.components.synapses.hebbian.traceSTDPSynapse module ngclearn.components.synapses.modulated module

ngclearn.components.synapses.modulated.MSTDPETSynapse module ngclearn.components.synapses.modulated.REINFORCESynapse module ngclearn.components.synapses.patched module ngclearn.components.synapses.patched.hebbianPatchedSynapse module ngclearn.components.synapses.patched.patchedSynapse module ngclearn.components.synapses.patched.staticPatchedSynapse module ngclearn.components.synapses.staticSynapse module ngclearn.components.synapses.STPDenseSynapse module ngclearn.modules module ngclearn.modules.regression module ngclearn.modules.regression.elastic_net module ngclearn.modules.regression.lasso module ngclearn.modules.regression.ridge module ngclearn.operations module ngclearn.utils module ngclearn.utils.analysis module ngclearn.utils.analysis.attentive_probe module ngclearn.utils.analysis.linear_probe module ngclearn.utils.analysis.probe module ngclearn.utils.data_loader module ngclearn.utils.density module ngclearn.utils.density.bernoulliMixture module ngclearn.utils.density.exponentialMixture module ngclearn.utils.density.gaussianMixture module ngclearn.utils.density.mixture module ngclearn.utils.diffeq module ngclearn.utils.diffeq.ode_utils module ngclearn.utils.diffeq.odes module ngclearn.utils.distribution_generator module ngclearn.utils.feature_dictionaries module ngclearn.utils.feature_dictionaries.polynomialLibrary module ngclearn.utils.io_utils module ngclearn.utils.JaxProcessesMixin module ngclearn.utils.masks module ngclearn.utils.masks.multiblock2d module ngclearn.utils.metric_utils module ngclearn.utils.model_utils module ngclearn.utils.optim module ngclearn.utils.optim.adam module ngclearn.utils.optim.nag module ngclearn.utils.optim.optim_utils module ngclearn.utils.optim.sgd module ngclearn.utils.patch module ngclearn.utils.patch_utils module ngclearn.utils.surrogate_fx module ngclearn.utils.viz module ngclearn.utils.viz.compartment_plot module ngclearn.utils.viz.compartment_raster module ngclearn.utils.viz.dim_reduce module ngclearn.utils.viz.raster module ngclearn.utils.viz.spike_plot module ngclearn.utils.viz.synapse_plot module normalize_matrix() (in module ngclearn.utils.model_utils)

O

one_hot() (in module ngclearn.utils.model_utils)

oscillator() (in module ngclearn.utils.diffeq.odes)

P

patch_with_overlap() (in module ngclearn.utils.patch_utils) patch_with_stride() (in module ngclearn.utils.patch_utils) PatchedSynapse (class in ngclearn.components.synapses.patched.patchedSynapse) PatchGenerator (class in ngclearn.utils.patch) PhasorCell (class in ngclearn.components.input_encoders.phasorCell) plot_latents() (in module ngclearn.utils.viz.dim_reduce) plot_spiking_neuron() (in module ngclearn.utils.viz.spike_plot) PoissonCell (class in ngclearn.components.input_encoders.poissonCell) poly_order (ngclearn.utils.feature_dictionaries.polynomialLibrary.PolynomialLibrary attribute)

PolynomialLibrary (class in ngclearn.utils.feature_dictionaries.polynomialLibrary) predict() (ngclearn.utils.analysis.probe.Probe method) previous_result (ngclearn.utils.JaxProcessesMixin.JaxProcessesMixin property) previous_state (ngclearn.utils.JaxProcessesMixin.JaxProcessesMixin property) Probe (class in ngclearn.utils.analysis.probe) process() (ngclearn.utils.analysis.attentive_probe.AttentiveProbe method) (ngclearn.utils.analysis.linear_probe.LinearProbe method) (ngclearn.utils.analysis.probe.Probe method) pull_equations() (in module ngclearn.utils.model_utils)

Q

QuadLIFCell (class in ngclearn.components.neurons.spiking.quadLIFCell)

R

RAFCell (class in ngclearn.components.neurons.spiking.RAFCell) RateCell (class in ngclearn.components.neurons.graded.rateCell) REINFORCESynapse (class in ngclearn.components.synapses.modulated.REINFORCESynapse) relu() (in module ngclearn.utils.model_utils) relu6() (in module ngclearn.utils.model_utils) reset() (ngclearn.components.input_encoders.bernoulliCell.BernoulliCell method) (ngclearn.components.input_encoders.latencyCell.LatencyCell method) (ngclearn.components.input_encoders.phasorCell.PhasorCell method) (ngclearn.components.input_encoders.poissonCell.PoissonCell method) (ngclearn.components.neurons.graded.bernoulliErrorCell.BernoulliErrorCell method) (ngclearn.components.neurons.graded.gaussianErrorCell.GaussianErrorCell method) (ngclearn.components.neurons.graded.laplacianErrorCell.LaplacianErrorCell method) (ngclearn.components.neurons.graded.leakyNoiseCell.LeakyNoiseCell method) (ngclearn.components.neurons.graded.rateCell.RateCell method) (ngclearn.components.neurons.graded.rewardErrorCell.RewardErrorCell method) (ngclearn.components.neurons.spiking.adExCell.AdExCell method) (ngclearn.components.neurons.spiking.fitzhughNagumoCell.FitzhughNagumoCell method) (ngclearn.components.neurons.spiking.hodgkinHuxleyCell.HodgkinHuxleyCell method) (ngclearn.components.neurons.spiking.IFCell.IFCell method) (ngclearn.components.neurons.spiking.izhikevichCell.IzhikevichCell method) (ngclearn.components.neurons.spiking.LIFCell.LIFCell method) (ngclearn.components.neurons.spiking.quadLIFCell.QuadLIFCell method) (ngclearn.components.neurons.spiking.RAFCell.RAFCell method) (ngclearn.components.neurons.spiking.sLIFCell.SLIFCell method) (ngclearn.components.neurons.spiking.WTASCell.WTASCell method) (ngclearn.components.other.expKernel.ExpKernel method) (ngclearn.components.other.varTrace.VarTrace method) (ngclearn.components.synapses.alphaSynapse.AlphaSynapse method) (ngclearn.components.synapses.convolution.convSynapse.ConvSynapse method) (ngclearn.components.synapses.convolution.deconvSynapse.DeconvSynapse method) (ngclearn.components.synapses.convolution.hebbianConvSynapse.HebbianConvSynapse method) (ngclearn.components.synapses.convolution.hebbianDeconvSynapse.HebbianDeconvSynapse method) (ngclearn.components.synapses.convolution.traceSTDPConvSynapse.TraceSTDPConvSynapse method) (ngclearn.components.synapses.convolution.traceSTDPDeconvSynapse.TraceSTDPDeconvSynapse method) (ngclearn.components.synapses.denseSynapse.DenseSynapse method) (ngclearn.components.synapses.doubleExpSynapse.DoubleExpSynapse method) (ngclearn.components.synapses.exponentialSynapse.ExponentialSynapse method) (ngclearn.components.synapses.hebbian.BCMSynapse.BCMSynapse method) (ngclearn.components.synapses.hebbian.eventSTDPSynapse.EventSTDPSynapse method) (ngclearn.components.synapses.hebbian.expSTDPSynapse.ExpSTDPSynapse method) (ngclearn.components.synapses.hebbian.hebbianSynapse.HebbianSynapse method) (ngclearn.components.synapses.hebbian.traceSTDPSynapse.TraceSTDPSynapse method) (ngclearn.components.synapses.modulated.MSTDPETSynapse.MSTDPETSynapse method) (ngclearn.components.synapses.modulated.REINFORCESynapse.REINFORCESynapse method) (ngclearn.components.synapses.patched.hebbianPatchedSynapse.HebbianPatchedSynapse method) (ngclearn.components.synapses.patched.patchedSynapse.PatchedSynapse method) (ngclearn.components.synapses.STPDenseSynapse.STPDenseSynapse method)

RewardErrorCell (class in ngclearn.components.neurons.graded.rewardErrorCell) rot180() (in module ngclearn.components.synapses.convolution.ngcconv) row_mask (ngclearn.utils.distribution_generator.DistributionParams attribute) run_attention_probe() (in module ngclearn.utils.analysis.attentive_probe) run_linear_probe() (in module ngclearn.utils.analysis.linear_probe)

S

sample() (ngclearn.utils.density.bernoulliMixture.BernoulliMixture method) (ngclearn.utils.density.exponentialMixture.ExponentialMixture method) (ngclearn.utils.density.gaussianMixture.GaussianMixture method) (ngclearn.utils.density.mixture.Mixture method) save() (ngclearn.components.jaxComponent.JaxComponent method) (ngclearn.components.neurons.spiking.sLIFCell.SLIFCell method) (ngclearn.components.synapses.hebbian.hebbianSynapse.HebbianSynapse method) save_pkl() (in module ngclearn.utils.io_utils) scan() (ngclearn.utils.JaxProcessesMixin.JaxProcessesMixin method) secant_lif_estimator() (in module ngclearn.utils.surrogate_fx) serialize() (in module ngclearn.utils.io_utils) sgd_init() (in module ngclearn.utils.optim.sgd) sgd_step() (in module ngclearn.utils.optim.sgd) sigmoid() (in module ngclearn.utils.model_utils) silu() (in module ngclearn.utils.model_utils) sine() (in module ngclearn.utils.model_utils) SLIFCell (class in ngclearn.components.neurons.spiking.sLIFCell) softmax() (in module ngclearn.utils.model_utils)

softplus() (in module ngclearn.utils.model_utils) solve_ode() (in module ngclearn.utils.diffeq.ode_utils) StaticConvSynapse (class in ngclearn.components.synapses.convolution.staticConvSynapse) StaticDeconvSynapse (class in ngclearn.components.synapses.convolution.staticDeconvSynapse) StaticPatchedSynapse (class in ngclearn.components.synapses.patched.staticPatchedSynapse) StaticSynapse (class in ngclearn.components.synapses.staticSynapse) step() (ngclearn.utils.masks.multiblock2d.MaskCollator method) step_euler() (in module ngclearn.utils.diffeq.ode_utils) step_heun() (in module ngclearn.utils.diffeq.ode_utils) step_ralston() (in module ngclearn.utils.diffeq.ode_utils) step_rk2() (in module ngclearn.utils.diffeq.ode_utils) step_rk4() (in module ngclearn.utils.diffeq.ode_utils) step_update() (in module ngclearn.utils.optim.adam) (in module ngclearn.utils.optim.nag) (in module ngclearn.utils.optim.sgd) STPDenseSynapse (class in ngclearn.components.synapses.STPDenseSynapse) straight_through_estimator() (in module ngclearn.utils.surrogate_fx) swish() (in module ngclearn.utils.model_utils)

T

tanh() (in module ngclearn.utils.model_utils) target() (ngclearn.utils.patch.PatchGenerator method) telu() (in module ngclearn.utils.model_utils) tensorstats() (in module ngclearn.utils.model_utils) threshold() (in module ngclearn.utils.model_utils) threshold_cauchy() (in module ngclearn.utils.model_utils) threshold_soft() (in module ngclearn.utils.model_utils)

thresholding() (ngclearn.modules.regression.elastic_net.Iterative_ElasticNet method) (ngclearn.modules.regression.lasso.Iterative_Lasso method) (ngclearn.modules.regression.ridge.Iterative_Ridge method) TraceSTDPConvSynapse (class in ngclearn.components.synapses.convolution.traceSTDPConvSynapse) TraceSTDPDeconvSynapse (class in ngclearn.components.synapses.convolution.traceSTDPDeconvSynapse) TraceSTDPSynapse (class in ngclearn.components.synapses.hebbian.traceSTDPSynapse) triangular_estimator() (in module ngclearn.utils.surrogate_fx)

U

uniform() (ngclearn.utils.distribution_generator.DistributionGenerator static method) update() (ngclearn.utils.analysis.attentive_probe.AttentiveProbe method) (ngclearn.utils.analysis.linear_probe.LinearProbe method) (ngclearn.utils.analysis.probe.Probe method) (ngclearn.utils.density.bernoulliMixture.BernoulliMixture method) (ngclearn.utils.density.exponentialMixture.ExponentialMixture method) (ngclearn.utils.density.gaussianMixture.GaussianMixture method) (ngclearn.utils.density.mixture.Mixture method)

upper_triangle (ngclearn.utils.distribution_generator.DistributionParams attribute) use_numpy (ngclearn.utils.distribution_generator.DistributionParams attribute)

V

validate() (ngclearn.components.input_encoders.phasorCell.PhasorCell method) VarTrace (class in ngclearn.components.other.varTrace) visualize() (in module ngclearn.utils.viz.synapse_plot)

visualize_frame() (in module ngclearn.utils.viz.synapse_plot) visualize_gif() (in module ngclearn.utils.viz.synapse_plot) visualize_labels() (in module ngclearn.utils.viz.synapse_plot) viz_block() (in module ngclearn.utils.viz.synapse_plot)

W

WTASCell (class in ngclearn.components.neurons.spiking.WTASCell)